PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.117100.1
Common NameCsa_2G000390, LOC101213275
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 290aa    MW: 33827.4 Da    PI: 7.8716
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.117100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.9e-35611522102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Flkk+ye++ed+e++ ++swse+ +sf+v+d+++++k +LpkyFkhsnf+SF+RQLn+YgF+k+++++         weF+++ F+ gkk+ll++
  Cucsa.117100.1  61 FLKKTYEMVEDPETDPVVSWSETRKSFIVWDSHQLSKFLLPKYFKHSNFSSFIRQLNTYGFRKIDSDK---------WEFANEGFQGGKKHLLKN 146
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikrk++
  Cucsa.117100.1 147 IKRKNK 152
                     ****87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-5757150IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.5E-3857150IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.62E-3457150IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.8E-206184IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3161150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-2099111IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340100124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-20112124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MILPDDDGAE TGSGESVDEK MSEVKEEEEK DEVSTAATTM NKDGVWVKPM EGLHDVGPPP  60
FLKKTYEMVE DPETDPVVSW SETRKSFIVW DSHQLSKFLL PKYFKHSNFS SFIRQLNTYG  120
FRKIDSDKWE FANEGFQGGK KHLLKNIKRK NKYNNNHKKQ QRHLGLSINN TTLEDLTKPL  180
LVETEPLQTL RTDNNILRVE MSKLREQQQD SHNQLTLVEE RVRRAESKHQ QMFYFLAKMS  240
KNPAFCRQLL QKRMLRMKME LNNGDHEFGK KMKILGIQAH QNLGLDISED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-245015011120Heat shock factor protein 1
5d5u_B3e-245915027129Heat shock factor protein 1
5d5v_B3e-245915027129Heat shock factor protein 1
5d5v_D3e-245915027129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648602.10.0PREDICTED: heat stress transcription factor A-7a isoform X2
SwissprotP411521e-78HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A0A0LEU60.0A0A0A0LEU6_CUCSA; Uncharacterized protein
STRINGGLYMA13G16510.13e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.13e-67heat shock transcription factor A9
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]